Selected Pubilications
  Conferences
cit Jingsong Zhang, Jianmei Guo, Xiaoqing Yu, Xiangtian Yu, Weifeng Guo, Tao Zeng, and Luonan Chen. Mining K-mers of Various Lengths in Biological Sequences. 13th International Symposium on Bioinformatics Research and Applications (ISBRA 2017), 2017:186-195. pdf
  cit Jingsong Zhang,Yinglin Wang, Dingyu Yang. Automatic learning common definitional patterns from multi-domain wikipedia pages. In 2014 IEEE International Conference on Data Mining Workshop (ICDMW 2014), 2014:251-258.  bib, pdf.
  cit Jingsong Zhang,Yinglin Wang, Hao Wei. An interaction framework of service-oriented ontology learning. In Proceedings of the 21st ACM international conference on Information and knowledge management (CIKM 2012), 2012: 2303-2306. bib, pdf.
cit Dingyu Yang, Dongxiang Zhang, Kian-Lee Tan, Jian Cao, Frederic Le Mouel. CANDS: Continuous Optimal Navigation via Distributed Stream Processing. Proceedings of the VLDB Endowment (VLDB 2015), 2015, 8(2): 137-148. bib. pdf.
cit Dingyu Yang, Jian Cao. A Scalable Data Warehouse Model Based on Complex Semantic Event Processing in Distributed Systems. Proceedings of the IEEE 28th International Conference on Data Engineering Workshop on Data-Driven Decision Support and Guidance Systems (ICDE DGSS 2012). 2012: 94-97.bib.
cit Shiyou Qian, Jian Cao, Frederic Mouel Le, I. Sahel, and Minglu Li. Scram: A sharing considered route assignment mechanism for fair taxi route recommendations. Proceedings of the 21th ACM SIGKDD international conference on Knowledge discovery and data mining (SIGKDD 2015). ACM, 2015.
cit Shiyou Qian, Jian Cao, Yanmin Zhu, Minglu Li, Jie Wang. REIN: A fast event matching approach for content-based publish/subscribe systems. INFOCOM, 2014 Proceedings IEEE (INFOCOM 2014). IEEE, 2014: 2058-2066.bib.
cit Shiyou Qian, Yanmin Zhu, Minglu Li. Smart recommendation by mining large-scale GPS traces. Wireless Communications and Networking Conference (WCNC 2012), 2012 IEEE. IEEE, 2012: 3267-3272.bib.
cit  Wenquan Wang, Wenbin Cai, Ya Zhang. Stability-Based Stopping Criterion for Active Learning. Data Mining (ICDM 2014), 2014 IEEE 14th International Conference on. IEEE, 2014: 1019-1024.bib.pdf.
cit Wenbin Cai, Ya Zhang, Siyuan Zhou and Wenquan Wang. Active Learning for Support Vector Machines with Maximum Model Change. Machine Learning and Knowledge Discovery in Databases (ECML-PKDD 2014). Springer Berlin Heidelberg, 2014: 211-226. bib.pdf.
cit Wenbin Cai, Ya Zhang, Siyuan Zhou. Maximizing expected model change for active learning in regression.Data Mining (ICDM 2013), 2013 IEEE 13th International Conference on. IEEE, 2013: 51-60. bib.pdf.
cit Wenbin Cai, Ya Zhang. Variance maximization via noise injection for active sampling in learning to rank. Proceedings of the 21st ACM international conference on Information and knowledge management (CIKM 2012). ACM, 2012: 1809-1813.bib.pdf.
  Journals
cit Xiangtian Yu, Jingsong Zhang, Shaoyan Sun, Xin Zhou, Tao Zeng, and Luonan Chen. Individual-specific edge-network analysis for disease prediction. Nucleic Acids Research, 2017.
cit Jingsong Zhang, Jianmei Guo, Xiaoqing Yu, Xiangtian Yu, Weifeng Guo, Tao Zeng, and Luonan Chen. Efficiently Mining Multi-mers in a Variety of Biological Sequences. IEEE Transactions on Computational Biology and Bioinformatics. 2018. 
cit Jianmei Guo, Jiahui Liang, Kai Shi, Dingyu Yang, Jingsong Zhang, Krzysztof Czarnecki, Vijay Ganesh, Huiqun Yu. SMTIBEA: a hybrid multi-objective optimization algorithm for configuring large constrained software product lines. Software & Systems Modeling, 2017: 1-20.
cit Weifeng Guo, Shaowu Zhang, Zegang Wei, Tao Zeng, Fei Liu, Jingsong Zhang, Fangxiang Wu and Luonan Chen. Constrained target controllability of complex networks. Journal of Statistical Mechanics: theory and experiment. 2017.
  cit Tao Zeng, Wanwei Zhang, Xiangtian Yu, Xiaoping Liu, Meiyi Li and Luonan Chen. Big-data-based edge biomarkers: study on dynamical drug sensitivity and resistance in individuals. Briefings in bioinformatics, 2015: bbv078. bib, pdf.
  cit Xiangtian Yu, Tao Zeng, Xiangdong Wang, Guojun Li and Luonan Chen. Unravelling personalized dysfunctional gene network of complex diseases based on differential network model. Journal of translational medicine, 2015, 13(1): 1. bib, pdf.
  cit Xiangtian Yu, Tao Zeng and Guojun Li. Integrative enrichment analysis: a new computational method to detect dysregulated pathways in heterogeneous samples. BMC genomics, 2015, 16(1): 1. bib, pdf.
  cit Rui Liu, Xiangtian Yu, Xiaoping Liu, Dong Xu, Kazuyuki Aihara and Luonan Chen. Identifying critical transitions of complex diseases based on a single sample. Bioinformatics, 2014: btu084. bib, pdf.
  cit Xiangtian Yu, Guojun Li and Luonan Chen. Prediction and early diagnosis of complex diseases by edge-network. Bioinformatics, 2014, 30(6): 852-859. bib, pdf.
  cit Tao Zeng, Wanwei Zhang, Xiangtian Yu, Xiaoping Liu, Meiyi Li, Rui Liu and Luonan Chen. Edge biomarkers for classification and prediction of phenotypes. Science China Life Sciences, 2014, 57(11): 1103-1114. bib, pdf.
  cit Jingsong Zhang, YinglinWang, Dingyu Yang. CCSpan: Mining Closed Contiguous Sequential Patterns. Knowledge-Based Systems (KBS), 2015, 89: 1-13. bib, pdf.
  cit Jingsong Zhang, Yinglin Wang, Chao Zhang. Mining Contiguous Sequential Generators in Biological Sequences, IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB), 2016, 13(5): 855-867. bib, pdf.
cit Dingyu Yang, Jian Cao, Sai Wu, Jie Wang. Progressive Online Aggregation in a Distributed Stream Systems. Journal of Systems and Software(JSS), 2015, 102: 146-157. bib.
cit Dingyu Yang, Jian Cao, Jiwen Fu, JieWang, Jianmei Guo. A pattern fusion model for multistep-ahead CPU load prediction. Journal of Systems and Software(JSS), 2013, 86(5): 1257-1266. bib.
cit Shiyou Qian, Jian Cao,Yanmin Zhu, Minglu Li, Jie Wang. H-Tree: An Efficient Index Structurefor Event Matching in Content-Based Publish/Subscribe Systems. IEEE Transactions on Parallel & Distributed Systems (TPDS), 2015 (6): 1622-1632. bib.
cit Wenbin Cai, Muhan Zhang, Ya Zhang. Active Learning via Noise Injection for Web Search Ranking. ACM Transactions on the WEB (TWEB), 9(1), 2015. pdf.
cit Wenbin Cai, Muhan Zhang, Ya Zhang. Active learning for ranking with sample density. Information Retrieval Journal (IR), 2015, 18(2): 123-144.bib.pdf.


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The work is currently supported in part by CIT of SJTU