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Mining Frequent Multi-mers (k-mers of various lengths) by Inverted Projection
(MulMer algorithm, see
J. Zhang, et al, 2017
for details)
Select a text file with SAF:
(Select)
(E.g., Input:
WP_044990988_SAF.txt
or
BindingSiteSet_std_sel_saf.txt
Output:
WP_044990988_SAF_2.txt
or
BindingSiteSet_std_sel_saf_2.txt
)
Input a sequence
Separator: ,
Length constaint:
All lengths
Minimum length
From
to
(coming soon)
Excluded string:
Minimum support:
(Ranging from 2 to sequence length)
Error Input ~
Output frequent multi-mers ( Y: default value):
Details of dataset and running:
Download the mined multi-mer set (txt)
Download the running information (txt)
These works are currently supported by Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, Shanghai 200031, China
Copyright @ 2015 Dr. Jasun Zhang (jasun
dmbio.info) All rights reserved.
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