Algorithms  >  PDpre
     CCSpan Algorithm
        CCSpan+ Algorithm
        ConSpan Algorithm
        CCSpm Algorithm
     ConSgen Algorithm
        ConSgen+ Algorithm
     CloKmer Algorithm
        CloKmer2 Algorithm
        CloKmer3 Algorithm
     MulMer Algorithm
        EquiCla Algorithm
     PDpre Algorithm
     Species Evolution
     Virus Evolution
     Biological Signatures
     Other Algorithms
  Predicting Protein Domains 

 
 
   Example, GenBank: JAR35526
        
(Equivalence Classes of proteins or domains)
(max-pattern_support_#level_#patterns)
Select a EC pattern file:
(EPs)
Species count:
Column num. (e.g., 0, 1, 2, 3 or others)
Predicted protein domains:
Note:
  • Output format: Domain ID, Start position, End position, Predicted domain, Longer string, Pattern, Score
  • Descending order by the scores of probability
  • Length of plain sequence:
  • Number of predicted domains:
  • Running time:
  • Memory usage:
Download the plain sequence
Download the predicted domains







These works are currently supported by Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, Shanghai 200031, China
Copyright @ 2015 Dr. Jasun Zhang (jasundmbio.info) All rights reserved.
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